.. LBFextract documentation master file, created by
   sphinx-quickstart on Mon Oct  2 09:34:02 2023.
   You can adapt this file completely to your liking, but it should at least
   contain the root `toctree` directive.

.. image:: _static/logo.png
   :align: center
   :alt: LBF front page

----

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   :alt: Python

Welcome to LBFextract's documentation!
======================================


.. contents:: Table of Contents
   :depth: 2
   :local:

.. toctree::
   :maxdepth: 2
   :caption: Contents:

   learn_about_lbf
   get_started
   examples
   differential_TF_activity_analysis
   tutorial
   plugins
   contributing

.. toctree::
   :maxdepth: 2
   :caption: API:

   lbfextract
   fextract
   fextract_entropy
   fextract_fragment_length_distribution
   fextract_relative_entropy_to_flanking
   fragment_length_ratios
   fextract_batch_coverage
   fextract_batch_entropy
   fextract_fragment_length_distribution_in_batch
   fextract_relative_entropy_to_flanking_in_batch
   fextract_fragment_length_ratios
   plotting_lib
   transcription_factor_analysis
   

Indices and tables
==================

* :ref:`genindex`
* :ref:`modindex`
* :ref:`search`