LBFextract

Contents:

  • Learn about LBFextract
  • Get started
  • Examples
  • Differential Transcription Factor Activity Analysis
  • LBFextract tutorial
  • 1. Installation
  • 2. CLI inerface
  • 3. Python interface
  • 4. Differentially active Transcription Factors (TFs)
  • Plugins
  • Contributing Guidelines

API:

  • LBFfextract package
  • fextract package
  • fextract_entropy package
  • fextract_fragment_length_distribution package
  • fextract_relative_entropy_to_flanking package
  • fextract_batch_coverage package
  • fextract_batch_entropy package
  • fextract_fragment_length_distribution_in_batch package
  • fextract_fragment_length_ratios package
  • plotting_lib package
  • transcription_factor_analysis package
LBFextract
  • Overview: module code

All modules for which code is available

  • lbfextract
    • lbfextract.fextract.cli_lib
    • lbfextract.fextract.lib
    • lbfextract.fextract.schemas
    • lbfextract.fextract.signal_transformer
    • lbfextract.fextract.tui.app
    • lbfextract.fextract.tui.my_directory_tree
    • lbfextract.fextract_batch_coverage.plugin
    • lbfextract.fextract_batch_coverage.schemas
    • lbfextract.fextract_entropy.plugin
    • lbfextract.fextract_fragment_length_distribution.plugin
    • lbfextract.fextract_fragment_length_distribution.schemas
    • lbfextract.fextract_fragment_length_distribution.signal_summarizers
    • lbfextract.fextract_fragment_length_distribution_in_batch.plugin
    • lbfextract.fextract_fragment_length_ratios.plugin
    • lbfextract.fextract_relative_entropy_to_flanking.plugin
    • lbfextract.plotting_lib.plotting_functions
    • lbfextract.transcription_factor_analysis.accessibility_extraction
    • lbfextract.transcription_factor_analysis.differential_signal_analysis
    • lbfextract.transcription_factor_analysis.loaders
    • lbfextract.transcription_factor_analysis.schemas
    • lbfextract.transcription_factor_analysis.utils

© Copyright 2023, Isaac Lazzeri.

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